-write-single-snp - restrict data analysis to only the first SNP per locus.-max-obs-het - specify a maximum observed heterozygosity required to process a nucleotide site at a locus (applied to the metapopulation).-min-mac - specify a minimum minor allele count required to process a SNP (applied to the metapopulation).-min-maf - specify a minimum minor allele frequency required to process a nucleotide site at a locus (0 -H,-filter-haplotype-wise - apply the above filters haplotype wise (unshared SNPs will be pruned to reduce haplotype-wise missing data).-R,-min-samples-overall - minimum percentage of individuals across populations required to process a locus.-r,-min-samples-per-pop - minimum percentage of individuals in a population required to process a locus for that population.
0 Comments
Leave a Reply. |